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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034708 through 18771 annotations produced 1 hits



CG5625 (Vps35):

Annotation Number : CG5625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034708
Gbrowse : chr2R:18073482-18077392 (+) // 100.0 //
Probeset : 1625656_s_at
Accessions : protein= NP_611651; /// NP_726175;, nucleotide= NM_137807; /// NM_166518;
Pathway : 0005768 // endosome // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034708.
BioGrid reports that CG5625 interacts with CG7879 .
TRiP has 1 RNAi stocks for FBgn0034708 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034708 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain304 44 of 4 1.20Up
Head288 84 of 4 1.10None
Eye393 164 of 4 1.50Up
Thoracicoabdominal ganglion312 44 of 4 1.20Up
Salivary gland433 124 of 4 1.65Up
Crop349 34 of 4 1.30Up
Midgut330 134 of 4 1.30Up
Tubule430 64 of 4 1.60Up
Hindgut311 114 of 4 1.20Up
Heart342 214 of 4 1.30Up
Fat body272 144 of 4 1.04None
Ovary362 64 of 4 1.40Up
Testis97 54 of 4 0.40Down
Male accessory glands364 144 of 4 1.40Up
Virgin spermatheca300 114 of 4 1.14Up
Mated spermatheca331 134 of 4 1.26Up
Adult carcass236 54 of 4 0.90Down
Larval CNS444 264 of 4 1.69Up
Larval Salivary gland492 64 of 4 1.88Up
Larval midgut276 74 of 4 1.05None
Larval tubule455 144 of 4 1.70Up
Larval hindgut382 104 of 4 1.46Up
Larval fat body288 74 of 4 1.10Up
Larval trachea342 354 of 4 1.30Up
Larval carcass305 74 of 4 1.17Up
S2 cells (growing)466 84 of 4 1.77Up
Whole fly262 74 of 4

Looking for FBgn0034708. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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