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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034713 through 18771 annotations produced 1 hits



(CG11291):

Annotation Number : CG11291
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034713
Gbrowse : chr2R:18098945-18100209 (+) // 100.0 //
Probeset : 1635426_at
Accessions : protein= NP_611656;, nucleotide= NM_137812;
Interpro : 0003869 // 4-nitrophenylphosphatase activity // inferred from sequence or structural similarity /// 0003869 // 4-nitroph
FlyMine data for FBgn0034713.
VDRC has 3 RNAi stocks for FBgn0034713 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye2 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.10Down
Salivary gland7 ± 10 of 4 0.16Down
Crop2 ± 00 of 4 0.10Down
Midgut5 ± 11 of 4 0.10Down
Tubule5 ± 01 of 4 0.10Down
Hindgut6 ± 00 of 4 0.10Down
Heart3 ± 20 of 4 0.07Down
Fat body6 ± 10 of 4 0.13Down
Ovary2 ± 10 of 4 0.00Down
Testis648 ± 164 of 414.10Up
Male accessory glands6 ± 22 of 4 0.10Down
Virgin spermatheca4 ± 11 of 4 0.11Down
Mated spermatheca5 ± 00 of 4 0.13Down
Adult carcass10 ± 10 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.06Down
Larval Salivary gland5 ± 12 of 4 0.12Down
Larval midgut7 ± 20 of 4 0.15Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.07Down
Larval fat body49 ± 243 of 4 1.10None
Larval trachea4 ± 52 of 4 0.11Down
Larval carcass5 ± 10 of 4 0.12Down
S2 cells (growing)2 ± 11 of 4 0.06Down
Whole fly46 ± 04 of 4

Looking for FBgn0034713. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime