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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034717 through 18771 annotations produced 1 hits


Annotation Number : CG5819
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034717
Gbrowse : chr2R:18180963-18184460 (+) // 100.0 //
Probeset : 1624736_a_at
Accessions : protein= NP_611660; /// NP_726186;, nucleotide= NM_137816; /// NM_166523;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0034717.
BDGP gene expression has embryonic in situ data for CG5819: 13 pix of staining in 8 body parts.
Homophila reports that CG5819 is a close match (5e-11) to human gene NOGOR;RTN4R (NP_075380), a gene associated with {Schizophrenia, susceptibility to}, 181500 (3).
TRiP has 1 RNAi stocks for FBgn0034717 available for purchase.
VDRC has 5 RNAi stocks for FBgn0034717 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 22 of 4 0.10Down
Head71 74 of 4 1.20None
Eye46 74 of 4 0.76None
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland22 72 of 4 0.36Down
Crop10 31 of 4 0.20Down
Midgut339 84 of 4 5.60Up
Tubule688 574 of 411.40Up
Hindgut113 34 of 4 1.90Up
Heart139 164 of 4 2.30Up
Fat body311 484 of 4 5.14Up
Ovary1 00 of 4 0.00Down
Testis2 00 of 4 0.00Down
Male accessory glands11 10 of 4 0.20Down
Virgin spermatheca410 204 of 4 6.77Up
Mated spermatheca271 204 of 4 4.47Up
Adult carcass135 164 of 4 2.20Up
Larval CNS3 20 of 4 0.05Down
Larval Salivary gland3 10 of 4 0.06Down
Larval midgut431 414 of 4 7.12Up
Larval tubule433 104 of 4 7.10Up
Larval hindgut143 134 of 4 2.36Up
Larval fat body6 10 of 4 0.10Down
Larval trachea5 30 of 4 0.10Down
Larval carcass2 00 of 4 0.04Down
S2 cells (growing)4 10 of 4 0.08Down
Whole fly60 64 of 4

Looking for FBgn0034717. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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