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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034718 through 18771 annotations produced 1 hits



windpipe (wdp):

Annotation Number : CG3413
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034718
Gbrowse : chr2R:18185717-18199425 (-) // 100.0 //
Probeset : 1641504_s_at
Accessions : protein= NP_611661; /// NP_726187; /// NP_726188; /// NP_726189;, nucleotide= NM_137817; /// NM_166524; /// NM_166525; /// NM_166526;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statemen
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0034718.
TRiP has 1 RNAi stocks for FBgn0034718 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034718 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain216 144 of 4 0.70Down
Head406 194 of 4 1.40Up
Eye378 274 of 4 1.27None
Thoracicoabdominal ganglion835 454 of 4 2.80Up
Salivary gland1716 394 of 4 5.77Up
Crop162 104 of 4 0.50Down
Midgut1302 234 of 4 4.40Up
Tubule1026 544 of 4 3.40Up
Hindgut909 144 of 4 3.10Up
Heart526 184 of 4 1.77Up
Fat body844 144 of 4 2.84Up
Ovary67 104 of 4 0.20Down
Testis317 54 of 4 1.10None
Male accessory glands56 54 of 4 0.20Down
Virgin spermatheca472 84 of 4 1.59Up
Mated spermatheca577 254 of 4 1.94Up
Adult carcass523 304 of 4 1.80Up
Larval CNS399 194 of 4 1.34Up
Larval Salivary gland205 124 of 4 0.69Down
Larval midgut2152 2334 of 4 7.23Up
Larval tubule644 74 of 4 2.20Up
Larval hindgut2275 1114 of 4 7.64Up
Larval fat body405 294 of 4 1.40Up
Larval trachea636 454 of 4 2.14Up
Larval carcass1141 1004 of 4 3.83Up
S2 cells (growing)805 144 of 4 2.70Up
Whole fly297 124 of 4

Looking for FBgn0034718. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime