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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034721 through 18771 annotations produced 1 hits



(CG11298):

Annotation Number : CG11298
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034721
Gbrowse : chr2R:18235811-18236387 (+) // 100.0 //
Probeset : 1629584_at
Accessions : protein= NP_611664;, nucleotide= NM_137820;
FlyMine data for FBgn0034721.
BDGP gene expression has embryonic in situ data for CG11298: 6 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0034721 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland9 ± 10 of 4 0.19Down
Crop3 ± 10 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart0 ± 00 of 4 0.02Down
Fat body3 ± 10 of 4 0.06Down
Ovary0 ± 00 of 4 0.00Down
Testis588 ± 114 of 411.40Up
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 00 of 4 0.06Down
Mated spermatheca1 ± 00 of 4 0.03Down
Adult carcass9 ± 40 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.03Down
Larval Salivary gland5 ± 10 of 4 0.11Down
Larval midgut5 ± 20 of 4 0.10Down
Larval tubule4 ± 11 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.04Down
Larval fat body26 ± 122 of 4 0.50None
Larval trachea2 ± 20 of 4 0.04Down
Larval carcass2 ± 00 of 4 0.04Down
S2 cells (growing)3 ± 00 of 4 0.08Down
Whole fly51 ± 14 of 4

Looking for FBgn0034721. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime