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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034723 through 18771 annotations produced 1 hits


Annotation Number : CG13506
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034723
Gbrowse : chr2R:18270640-18281527 (+) // 100.0 //
Probeset : 1641120_at
Accessions : protein= NP_611666;, nucleotide= NM_137822;
FlyMine data for FBgn0034723.
BDGP gene expression has embryonic in situ data for CG13506: 13 pix of staining in 12 body parts.
VDRC has 2 RNAi stocks for FBgn0034723 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain652 144 of 4 1.80Up
Head486 344 of 4 1.30Up
Eye194 94 of 4 0.54Down
Thoracicoabdominal ganglion1668 344 of 4 4.60Up
Salivary gland1113 554 of 4 3.07Up
Crop1530 364 of 4 4.20Up
Midgut644 144 of 4 1.80Up
Tubule1657 584 of 4 4.60Up
Hindgut2245 454 of 4 6.20Up
Heart1827 304 of 4 5.04Up
Fat body388 424 of 4 1.07None
Ovary41 14 of 4 0.10Down
Testis81 24 of 4 0.20Down
Male accessory glands246 174 of 4 0.70Down
Virgin spermatheca186 24 of 4 0.51Down
Mated spermatheca256 134 of 4 0.71Down
Adult carcass930 184 of 4 2.60Up
Larval CNS288 204 of 4 0.80Down
Larval Salivary gland950 104 of 4 2.62Up
Larval midgut654 954 of 4 1.81None
Larval tubule918 354 of 4 2.50Up
Larval hindgut1305 904 of 4 3.60Up
Larval fat body15 32 of 4 0.00Down
Larval trachea184 234 of 4 0.51Down
Larval carcass286 264 of 4 0.79None
S2 cells (growing)0 00 of 4 0.00Down
Whole fly362 174 of 4

Looking for FBgn0034723. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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