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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034724 through 18771 annotations produced 1 hits



Cell adhesion protein (CG3624):

Annotation Number : CG3624
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034724
Gbrowse : chr2R:18281566-18289561 (-) // 100.0 //
Probeset : 1639592_at
Accessions : protein= NP_611667;, nucleotide= NM_137823;
FlyMine data for FBgn0034724.
BDGP gene expression has embryonic in situ data for CG3624: 48 pix of staining in 23 body parts.
TRiP has 1 RNAi stocks for FBgn0034724 available for purchase.
VDRC has 4 RNAi stocks for FBgn0034724 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 ± 54 of 4 0.40Down
Head352 ± 54 of 4 2.40Up
Eye165 ± 264 of 4 1.12None
Thoracicoabdominal ganglion62 ± 24 of 4 0.40Down
Salivary gland28 ± 54 of 4 0.19Down
Crop534 ± 44 of 4 3.60Up
Midgut35 ± 24 of 4 0.20Down
Tubule23 ± 33 of 4 0.20Down
Hindgut80 ± 54 of 4 0.50Down
Heart682 ± 364 of 4 4.59Up
Fat body534 ± 784 of 4 3.59Up
Ovary115 ± 144 of 4 0.80None
Testis12 ± 04 of 4 0.10Down
Male accessory glands22 ± 23 of 4 0.20Down
Virgin spermatheca553 ± 244 of 4 3.72Up
Mated spermatheca657 ± 604 of 4 4.42Up
Adult carcass353 ± 144 of 4 2.40Up
Larval CNS214 ± 174 of 4 1.44Up
Larval Salivary gland10 ± 31 of 4 0.07Down
Larval midgut50 ± 34 of 4 0.34Down
Larval tubule7 ± 20 of 4 0.00Down
Larval hindgut36 ± 44 of 4 0.24Down
Larval fat body19 ± 33 of 4 0.10Down
Larval trachea728 ± 684 of 4 4.90Up
Larval carcass80 ± 94 of 4 0.54Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly148 ± 114 of 4

Looking for FBgn0034724. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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