FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034725 through 18771 annotations produced 2 hits

/// cuticle p. I (CG6044 /// Lcp1):

Annotation Number : CG11650
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002531
Gbrowse : chr2R:4318138-4318737 (-) // 100.0 //
Probeset : 1626830_at
Accessions : protein= NP_476619;, nucleotide= NM_057271;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0002531.
BDGP gene expression has embryonic in situ data for Lcp1: 4 pix of staining in 1 body parts.
BioGrid reports that CG11650 interacts with CG12265 CG12992 CG14224 CG18292 CG6357 .
VDRC has 3 RNAi stocks for FBgn0002531 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.80	None
Head	2 ± 1	0 of 4	0.90	None
Eye	152 ± 58	4 of 4	62.26	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.60	None
Salivary gland	4 ± 2	0 of 4	1.89	None
Crop	2 ± 1	0 of 4	1.00	None
Midgut	8 ± 3	0 of 4	3.40	None
Tubule	1 ± 0	0 of 4	0.40	Down
Hindgut	2 ± 0	0 of 4	0.80	None
Heart	3 ± 1	0 of 4	1.59	None
Fat body	2 ± 1	0 of 4	0.94	None
Ovary	1 ± 0	0 of 4	0.40	None
Testis	1 ± 0	0 of 4	0.40	None
Male accessory glands	2 ± 1	0 of 4	1.20	None
Virgin spermatheca	1 ± 1	0 of 4	0.63	None
Mated spermatheca	1 ± 0	0 of 4	0.53	None
Adult carcass	1 ± 0	0 of 4	0.60	None
Larval CNS	27 ± 43	1 of 4	11.22	None
Larval Salivary gland	4 ± 1	0 of 4	1.89	None
Larval midgut	16 ± 3	1 of 4	6.80	Up
Larval tubule	1 ± 0	0 of 4	0.80	None
Larval hindgut	2661 ± 249	4 of 4	1086.31	Up
Larval fat body	41 ± 20	1 of 4	16.90	None
Larval trachea	5280 ± 398	4 of 4	2155.24	Up
Larval carcass	4616 ± 618	4 of 4	1884.18	Up
S2 cells (growing)	2 ± 0	0 of 4	0.85	None
Whole fly	2 ± 1	0 of 4

(CG6044):

Annotation Number : CG6044
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034725
Gbrowse : chr2R:18291677-18295877 (+) // 100.0 //
Probeset : 1629897_a_at
Accessions : protein= NP_001097416; /// NP_001163252; /// NP_611668; /// NP_995923;, nucleotide= NM_001103946; /// NM_001169781; /// NM_137824; /// NM_206201;
FlyMine data for FBgn0034725.
BDGP gene expression has embryonic in situ data for CG6044: 20 pix of staining in 9 body parts.
TRiP has 1 RNAi stocks for FBgn0034725 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034725 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1462 ± 39	4 of 4	26.50	Up
Head	599 ± 24	4 of 4	10.90	Up
Eye	1152 ± 70	4 of 4	20.91	Up
Thoracicoabdominal ganglion	1800 ± 38	4 of 4	32.70	Up
Salivary gland	7 ± 4	0 of 4	0.14	Down
Crop	3 ± 1	0 of 4	0.10	Down
Midgut	3 ± 0	0 of 4	0.10	Down
Tubule	4 ± 1	0 of 4	0.10	Down
Hindgut	6 ± 0	0 of 4	0.10	Down
Heart	11 ± 1	4 of 4	0.21	Down
Fat body	13 ± 3	3 of 4	0.24	Down
Ovary	5 ± 0	2 of 4	0.10	Down
Testis	6 ± 2	2 of 4	0.10	Down
Male accessory glands	7 ± 0	0 of 4	0.10	Down
Virgin spermatheca	5 ± 0	0 of 4	0.10	Down
Mated spermatheca	4 ± 1	0 of 4	0.08	Down
Adult carcass	40 ± 2	4 of 4	0.70	Down
Larval CNS	156 ± 10	4 of 4	2.84	Up
Larval Salivary gland	7 ± 0	2 of 4	0.13	Down
Larval midgut	22 ± 2	4 of 4	0.41	Down
Larval tubule	3 ± 1	0 of 4	0.10	Down
Larval hindgut	7 ± 0	1 of 4	0.14	Down
Larval fat body	3 ± 0	0 of 4	0.10	Down
Larval trachea	26 ± 21	4 of 4	0.48	None
Larval carcass	18 ± 1	4 of 4	0.34	Down
S2 cells (growing)	4 ± 1	0 of 4	0.08	Down
Whole fly	55 ± 1	4 of 4

Looking for FBgn0034725. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720