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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034726 through 18771 annotations produced 1 hits



NF-YC-like (Mes4):

Annotation Number : CG11301
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034726
Gbrowse : chr2R:18299358-18300040 (+) // 99.05 //
Probeset : 1627465_at
Accessions : protein= NP_001163253; /// NP_611669;, nucleotide= NM_001169782; /// NM_137825;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inf
FlyMine data for FBgn0034726.
BioGrid reports that CG11301 interacts with CG17244 CG4185 CG5315 CG17769 .
TRiP has 1 RNAi stocks for FBgn0034726 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034726 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain116 24 of 4 0.80Down
Head114 24 of 4 0.80Down
Eye191 94 of 4 1.27Up
Thoracicoabdominal ganglion87 34 of 4 0.60Down
Salivary gland75 64 of 4 0.50Down
Crop190 34 of 4 1.30Up
Midgut59 34 of 4 0.40Down
Tubule46 24 of 4 0.30Down
Hindgut77 34 of 4 0.50Down
Heart69 34 of 4 0.46Down
Fat body60 64 of 4 0.40Down
Ovary345 14 of 4 2.30Up
Testis54 14 of 4 0.40Down
Male accessory glands93 54 of 4 0.60Down
Virgin spermatheca42 14 of 4 0.28Down
Mated spermatheca63 104 of 4 0.42Down
Adult carcass66 04 of 4 0.40Down
Larval CNS221 134 of 4 1.47Up
Larval Salivary gland97 54 of 4 0.65Down
Larval midgut37 14 of 4 0.25Down
Larval tubule89 24 of 4 0.60Down
Larval hindgut62 34 of 4 0.41Down
Larval fat body35 34 of 4 0.20Down
Larval trachea148 34 of 4 0.99None
Larval carcass62 34 of 4 0.42Down
S2 cells (growing)167 24 of 4 1.11None
Whole fly150 64 of 4

Looking for FBgn0034726. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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