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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034727 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S29 (mRpS29):

Annotation Number : CG3633
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034727
Gbrowse : chr2R:18306441-18307876 (-) // 100.0 //
Probeset : 1632771_at
Accessions : protein= NP_523811;, nucleotide= NM_079087;
Pathway : 0005761 // mitochondrial ribosome // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal su
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity
FlyMine data for FBgn0034727.
BDGP gene expression has embryonic in situ data for mRpS29: 9 pix of staining in 5 body parts.
VDRC has 1 RNAi stocks for FBgn0034727 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain171 94 of 4 0.90None
Head117 64 of 4 0.60Down
Eye210 124 of 4 1.12None
Thoracicoabdominal ganglion220 204 of 4 1.20None
Salivary gland191 114 of 4 1.02None
Crop132 54 of 4 0.70Down
Midgut140 114 of 4 0.70Down
Tubule119 24 of 4 0.60Down
Hindgut155 44 of 4 0.80Down
Heart136 44 of 4 0.73Down
Fat body99 44 of 4 0.53Down
Ovary266 84 of 4 1.40Up
Testis86 64 of 4 0.50Down
Male accessory glands213 164 of 4 1.10None
Virgin spermatheca128 54 of 4 0.68Down
Mated spermatheca120 54 of 4 0.64Down
Adult carcass87 44 of 4 0.50Down
Larval CNS136 84 of 4 0.73Down
Larval Salivary gland131 124 of 4 0.70Down
Larval midgut100 54 of 4 0.54Down
Larval tubule96 84 of 4 0.50Down
Larval hindgut247 174 of 4 1.31Up
Larval fat body53 14 of 4 0.30Down
Larval trachea199 134 of 4 1.06None
Larval carcass116 134 of 4 0.62Down
S2 cells (growing)133 34 of 4 0.71Down
Whole fly187 54 of 4

Looking for FBgn0034727. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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