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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034728 through 18771 annotations produced 1 hits



rad50 (rad50):

Annotation Number : CG6339
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034728
Gbrowse : chr2R:18308543-18312987 (+) // 100.0 //
Probeset : 1638887_a_at
Accessions : protein= NP_726199;, nucleotide= NM_166533;
Pathway : "0000781 // chromosome
Interpro : telomeric region // inferred from electronic annotation /// 0000793 // condensed chromosome // inferred from direct ass
FlyMine data for FBgn0034728.
VDRC has 2 RNAi stocks for FBgn0034728 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain109 54 of 4 0.70Down
Head90 74 of 4 0.60Down
Eye127 24 of 4 0.84None
Thoracicoabdominal ganglion117 54 of 4 0.80Down
Salivary gland82 54 of 4 0.55Down
Crop127 84 of 4 0.80None
Midgut98 24 of 4 0.70Down
Tubule158 114 of 4 1.00None
Hindgut140 44 of 4 0.90None
Heart91 74 of 4 0.61Down
Fat body80 104 of 4 0.53Down
Ovary333 34 of 4 2.20Up
Testis46 24 of 4 0.30Down
Male accessory glands212 204 of 4 1.40Up
Virgin spermatheca173 114 of 4 1.15None
Mated spermatheca152 64 of 4 1.01None
Adult carcass82 54 of 4 0.50Down
Larval CNS233 134 of 4 1.55Up
Larval Salivary gland62 74 of 4 0.42Down
Larval midgut46 44 of 4 0.31Down
Larval tubule92 44 of 4 0.60Down
Larval hindgut108 134 of 4 0.72Down
Larval fat body65 44 of 4 0.40Down
Larval trachea267 544 of 4 1.78Up
Larval carcass73 54 of 4 0.49Down
S2 cells (growing)327 124 of 4 2.17Up
Whole fly150 94 of 4

Looking for FBgn0034728. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime