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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034731 through 18771 annotations produced 1 hits



(CG10384):

Annotation Number : CG10384
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034731
Gbrowse : chr2R:18353975-18359160 (+) // 100.0 //
Probeset : 1633351_at
Accessions : protein= NP_001163254; /// NP_611673;, nucleotide= NM_001169783; /// NM_137829;
Interpro : 0003723 // RNA binding // inferred from electronic annotation
FlyMine data for FBgn0034731.
VDRC has 2 RNAi stocks for FBgn0034731 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain120 ± 34 of 421.20Up
Head18 ± 13 of 4 3.30Up
Eye10 ± 10 of 4 1.86Up
Thoracicoabdominal ganglion46 ± 64 of 4 8.20Up
Salivary gland4 ± 20 of 4 0.79None
Crop4 ± 20 of 4 0.80None
Midgut5 ± 10 of 4 1.00None
Tubule2 ± 00 of 4 0.40Down
Hindgut3 ± 10 of 4 0.70None
Heart3 ± 20 of 4 0.59None
Fat body3 ± 30 of 4 0.55None
Ovary1 ± 00 of 4 0.30None
Testis4 ± 10 of 4 0.70None
Male accessory glands1 ± 00 of 4 0.30None
Virgin spermatheca5 ± 10 of 4 0.93None
Mated spermatheca1 ± 00 of 4 0.27None
Adult carcass1 ± 00 of 4 0.20None
Larval CNS20 ± 44 of 4 3.62Up
Larval Salivary gland3 ± 00 of 4 0.69None
Larval midgut5 ± 20 of 4 0.91None
Larval tubule1 ± 10 of 4 0.30None
Larval hindgut4 ± 20 of 4 0.72None
Larval fat body2 ± 00 of 4 0.30None
Larval trachea1 ± 00 of 4 0.32None
Larval carcass2 ± 00 of 4 0.39None
S2 cells (growing)1 ± 00 of 4 0.30None
Whole fly5 ± 10 of 4

Looking for FBgn0034731. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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