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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034733 through 18771 annotations produced 1 hits



(CG4752):

Annotation Number : CG4752
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034733
Gbrowse : chr2R:18365891-18370559 (+) // 100.0 //
Probeset : 1624290_at
Accessions : protein= NP_611675;, nucleotide= NM_137831;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from
FlyMine data for FBgn0034733.
BDGP gene expression has embryonic in situ data for CG4752: 21 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0034733 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 24 of 4 0.30Down
Head116 ± 94 of 4 1.10None
Eye86 ± 124 of 4 0.82None
Thoracicoabdominal ganglion62 ± 24 of 4 0.60Down
Salivary gland267 ± 84 of 4 2.53Up
Crop108 ± 44 of 4 1.00None
Midgut152 ± 114 of 4 1.40Up
Tubule2796 ± 1374 of 426.50Up
Hindgut147 ± 84 of 4 1.40Up
Heart93 ± 54 of 4 0.89None
Fat body320 ± 544 of 4 3.03Up
Ovary78 ± 44 of 4 0.70Down
Testis54 ± 24 of 4 0.50Down
Male accessory glands78 ± 54 of 4 0.70Down
Virgin spermatheca310 ± 104 of 4 2.93Up
Mated spermatheca364 ± 274 of 4 3.45Up
Adult carcass166 ± 54 of 4 1.60Up
Larval CNS18 ± 34 of 4 0.18Down
Larval Salivary gland108 ± 104 of 4 1.02None
Larval midgut319 ± 244 of 4 3.02Up
Larval tubule1578 ± 994 of 414.90Up
Larval hindgut149 ± 54 of 4 1.42Up
Larval fat body232 ± 284 of 4 2.20Up
Larval trachea41 ± 14 of 4 0.39Down
Larval carcass58 ± 64 of 4 0.55Down
S2 cells (growing)18 ± 24 of 4 0.17Down
Whole fly105 ± 84 of 4

Looking for FBgn0034733. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime