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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034734 through 18771 annotations produced 1 hits



(CG4554):

Annotation Number : CG4554
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034734
Gbrowse : chr2R:18370845-18379538 (+) // 100.0 //
Probeset : 1630247_at
Accessions : protein= NP_611676;, nucleotide= NM_137832;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0034734.
VDRC has 2 RNAi stocks for FBgn0034734 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 14 of 4 0.40Down
Head14 24 of 4 0.40Down
Eye13 14 of 4 0.38Down
Thoracicoabdominal ganglion17 13 of 4 0.50Down
Salivary gland35 52 of 4 0.98None
Crop28 14 of 4 0.80None
Midgut18 20 of 4 0.50Down
Tubule18 23 of 4 0.50Down
Hindgut23 14 of 4 0.70Down
Heart15 04 of 4 0.43Down
Fat body26 74 of 4 0.73None
Ovary84 34 of 4 2.30Up
Testis11 13 of 4 0.30Down
Male accessory glands48 44 of 4 1.30None
Virgin spermatheca22 14 of 4 0.61Down
Mated spermatheca32 14 of 4 0.90None
Adult carcass21 12 of 4 0.60Down
Larval CNS51 64 of 4 1.44Up
Larval Salivary gland39 34 of 4 1.10None
Larval midgut21 11 of 4 0.59Down
Larval tubule11 10 of 4 0.30Down
Larval hindgut26 44 of 4 0.74None
Larval fat body17 22 of 4 0.50Down
Larval trachea47 104 of 4 1.31None
Larval carcass37 74 of 4 1.04None
S2 cells (growing)66 24 of 4 1.85Up
Whole fly36 34 of 4

Looking for FBgn0034734. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime