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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034737 through 18771 annotations produced 1 hits



(CG11362):

Annotation Number : CG11362
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034737
Gbrowse : chr2R:18449864-18450358 (+) // 100.0 //
Probeset : 1626131_at
Accessions : protein= NP_611679;, nucleotide= NM_137835;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034737.
BioGrid reports that CG11362 interacts with CG15112 .
VDRC has 5 RNAi stocks for FBgn0034737 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 01 of 4 0.30Down
Head1 10 of 4 0.20Down
Eye3 11 of 4 0.32Down
Thoracicoabdominal ganglion5 11 of 4 0.60None
Salivary gland5 10 of 4 0.60None
Crop3 00 of 4 0.40Down
Midgut2 10 of 4 0.20Down
Tubule2 00 of 4 0.30Down
Hindgut8 04 of 4 0.90None
Heart2 10 of 4 0.25Down
Fat body4 20 of 4 0.42None
Ovary1 00 of 4 0.20Down
Testis111 74 of 411.40Up
Male accessory glands3 10 of 4 0.30Down
Virgin spermatheca3 11 of 4 0.35Down
Mated spermatheca2 10 of 4 0.29Down
Adult carcass5 10 of 4 0.50None
Larval CNS1 00 of 4 0.13Down
Larval Salivary gland2 00 of 4 0.27Down
Larval midgut2 00 of 4 0.27Down
Larval tubule3 22 of 4 0.40None
Larval hindgut2 01 of 4 0.23Down
Larval fat body16 71 of 4 1.70None
Larval trachea2 10 of 4 0.27Down
Larval carcass1 00 of 4 0.17Down
S2 cells (growing)2 00 of 4 0.22Down
Whole fly9 14 of 4

Looking for FBgn0034737. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime