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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034741 through 18771 annotations produced 1 hits



/// (CG30031 /// CG4269):

Annotation Number : CG4269
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034741
Gbrowse : chr2R:18486859-18487861 (+) // 100.0 //
Probeset : 1635507_at
Accessions : protein= NP_611683;, nucleotide= NM_137839;
Pathway : 0005576 // extracellular region // inferred from sequence similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0034741.
VDRC has 1 RNAi stocks for FBgn0034741 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 ± 141 of 4 0.20None
Head104 ± 184 of 4 0.90None
Eye7 ± 11 of 4 0.07None
Thoracicoabdominal ganglion19 ± 23 of 4 0.20None
Salivary gland12 ± 10 of 4 0.11None
Crop410 ± 304 of 4 3.60Up
Midgut53 ± 104 of 4 0.50None
Tubule39 ± 191 of 4 0.30Down
Hindgut852 ± 624 of 4 7.40Up
Heart16 ± 14 of 4 0.14None
Fat body17 ± 72 of 4 0.15None
Ovary4 ± 10 of 4 0.00None
Testis13 ± 12 of 4 0.10None
Male accessory glands82 ± 304 of 4 0.70None
Virgin spermatheca51 ± 94 of 4 0.44None
Mated spermatheca94 ± 224 of 4 0.82None
Adult carcass119 ± 154 of 4 1.00None
Larval CNS7 ± 12 of 4 0.07None
Larval Salivary gland26 ± 31 of 4 0.23None
Larval midgut38 ± 63 of 4 0.33None
Larval tubule84 ± 234 of 4 0.70None
Larval hindgut30 ± 64 of 4 0.26None
Larval fat body2425 ± 2294 of 421.20Up
Larval trachea22 ± 202 of 4 0.20None
Larval carcass23 ± 33 of 4 0.21None
S2 cells (growing)28 ± 14 of 4 0.25None
Whole fly114 ± 474 of 4

Looking for FBgn0034741. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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