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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034742 through 18771 annotations produced 1 hits



(CG4294):

Annotation Number : CG4294
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034742
Gbrowse : chr2R:18488300-18493140 (-) // 100.0 //
Probeset : 1629510_at
Accessions : protein= NP_611684;, nucleotide= NM_137840;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004427 // inorganic diphosphatase activity
FlyMine data for FBgn0034742.
BDGP gene expression has embryonic in situ data for CG4294: 15 pix of staining in 7 body parts.
BioGrid reports that CG4294 interacts with CG6808 CG7715 .
TRiP has 1 RNAi stocks for FBgn0034742 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034742 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain152 74 of 4 3.20Up
Head35 32 of 4 0.70Down
Eye62 24 of 4 1.28Up
Thoracicoabdominal ganglion93 54 of 4 1.90Up
Salivary gland86 113 of 4 1.78Up
Crop48 34 of 4 1.00None
Midgut39 20 of 4 0.80None
Tubule27 01 of 4 0.60Down
Hindgut41 42 of 4 0.80None
Heart28 24 of 4 0.60Down
Fat body41 21 of 4 0.85None
Ovary57 34 of 4 1.20None
Testis22 03 of 4 0.50Down
Male accessory glands135 104 of 4 2.80Up
Virgin spermatheca18 50 of 4 0.39Down
Mated spermatheca23 20 of 4 0.48Down
Adult carcass26 30 of 4 0.50Down
Larval CNS85 134 of 4 1.77Up
Larval Salivary gland47 52 of 4 0.98None
Larval midgut26 30 of 4 0.54Down
Larval tubule48 24 of 4 1.00None
Larval hindgut32 22 of 4 0.67Down
Larval fat body59 42 of 4 1.20None
Larval trachea61 84 of 4 1.28None
Larval carcass20 50 of 4 0.42Down
S2 cells (growing)54 33 of 4 1.13None
Whole fly48 34 of 4

Looking for FBgn0034742. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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