FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034742 through 18771 annotations produced 1 hits

(CG4294):

Annotation Number : CG4294
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034742
Gbrowse : chr2R:18488300-18493140 (-) // 100.0 //
Probeset : 1629510_at
Accessions : protein= NP_611684;, nucleotide= NM_137840;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004427 // inorganic diphosphatase activity
FlyMine data for FBgn0034742.
BDGP gene expression has embryonic in situ data for CG4294: 15 pix of staining in 7 body parts.
BioGrid reports that CG4294 interacts with CG6808 CG7715 .
TRiP has 1 RNAi stocks for FBgn0034742 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034742 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	152 ± 7	4 of 4	3.20	Up
Head	35 ± 3	2 of 4	0.70	Down
Eye	62 ± 2	4 of 4	1.28	Up
Thoracicoabdominal ganglion	93 ± 5	4 of 4	1.90	Up
Salivary gland	86 ± 11	3 of 4	1.78	Up
Crop	48 ± 3	4 of 4	1.00	None
Midgut	39 ± 2	0 of 4	0.80	None
Tubule	27 ± 0	1 of 4	0.60	Down
Hindgut	41 ± 4	2 of 4	0.80	None
Heart	28 ± 2	4 of 4	0.60	Down
Fat body	41 ± 2	1 of 4	0.85	None
Ovary	57 ± 3	4 of 4	1.20	None
Testis	22 ± 0	3 of 4	0.50	Down
Male accessory glands	135 ± 10	4 of 4	2.80	Up
Virgin spermatheca	18 ± 5	0 of 4	0.39	Down
Mated spermatheca	23 ± 2	0 of 4	0.48	Down
Adult carcass	26 ± 3	0 of 4	0.50	Down
Larval CNS	85 ± 13	4 of 4	1.77	Up
Larval Salivary gland	47 ± 5	2 of 4	0.98	None
Larval midgut	26 ± 3	0 of 4	0.54	Down
Larval tubule	48 ± 2	4 of 4	1.00	None
Larval hindgut	32 ± 2	2 of 4	0.67	Down
Larval fat body	59 ± 4	2 of 4	1.20	None
Larval trachea	61 ± 8	4 of 4	1.28	None
Larval carcass	20 ± 5	0 of 4	0.42	Down
S2 cells (growing)	54 ± 3	3 of 4	1.13	None
Whole fly	48 ± 3	4 of 4

Looking for FBgn0034742. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720