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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034744 through 18771 annotations produced 1 hits

Vps20 (Vps20):

Annotation Number : CG4071
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034744
Gbrowse : chr2R:18496037-18496936 (+) // 100.0 //
Probeset : 1635121_a_at
Accessions : protein= NP_611686; /// NP_726213;, nucleotide= NM_137842; /// NM_166536;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034744.
BDGP gene expression has embryonic in situ data for CG4071: 4 pix of staining in 1 body parts.
BioGrid reports that CG4071 interacts with CG8038 CG4720 CG5502 CG6398 CG8055 CG8189 CG9277 .
TRiP has 1 RNAi stocks for FBgn0034744 available for purchase.
VDRC has 4 RNAi stocks for FBgn0034744 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain137 34 of 4 1.20None
Head117 84 of 4 1.00None
Eye245 164 of 4 2.06Up
Thoracicoabdominal ganglion131 104 of 4 1.10None
Salivary gland171 84 of 4 1.44Up
Crop144 04 of 4 1.20None
Midgut201 114 of 4 1.70Up
Tubule232 74 of 4 1.90Up
Hindgut188 84 of 4 1.60Up
Heart184 54 of 4 1.55Up
Fat body112 174 of 4 0.94None
Ovary155 24 of 4 1.30Up
Testis67 54 of 4 0.60Down
Male accessory glands223 124 of 4 1.90Up
Virgin spermatheca112 54 of 4 0.94None
Mated spermatheca129 14 of 4 1.09None
Adult carcass124 84 of 4 1.00None
Larval CNS119 114 of 4 1.00None
Larval Salivary gland250 404 of 4 2.10Up
Larval midgut203 84 of 4 1.71Up
Larval tubule431 54 of 4 3.60Up
Larval hindgut166 54 of 4 1.40Up
Larval fat body198 164 of 4 1.70Up
Larval trachea151 124 of 4 1.27Up
Larval carcass127 134 of 4 1.07None
S2 cells (growing)401 64 of 4 3.37Up
Whole fly119 104 of 4

Looking for FBgn0034744. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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