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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034745 through 18771 annotations produced 1 hits



(CG4329):

Annotation Number : CG4329
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034745
Gbrowse : chr2R:18496837-18500881 (-) // 100.0 //
Probeset : 1636405_a_at
Accessions : protein= NP_611687; /// NP_726214;, nucleotide= NM_137843; /// NM_166537;
FlyMine data for FBgn0034745.
BDGP gene expression has embryonic in situ data for CG4329: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 10 of 4 0.30Down
Head6 ± 20 of 4 0.20Down
Eye5 ± 11 of 4 0.14Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.10Down
Salivary gland19 ± 20 of 4 0.53Down
Crop5 ± 20 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule5 ± 00 of 4 0.20Down
Hindgut4 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.08Down
Fat body6 ± 60 of 4 0.17Down
Ovary3 ± 00 of 4 0.10Down
Testis587 ± 104 of 416.20Up
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.11Down
Mated spermatheca3 ± 10 of 4 0.09Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS5 ± 30 of 4 0.15Down
Larval Salivary gland4 ± 20 of 4 0.13Down
Larval midgut4 ± 10 of 4 0.13Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut4 ± 20 of 4 0.12Down
Larval fat body50 ± 272 of 4 1.40None
Larval trachea4 ± 40 of 4 0.14Down
Larval carcass5 ± 10 of 4 0.15Down
S2 cells (growing)4 ± 20 of 4 0.12Down
Whole fly36 ± 24 of 4

Looking for FBgn0034745. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime