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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034748 through 18771 annotations produced 1 hits



(CG17807):

Annotation Number : CG17807
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034748
Gbrowse : chr2R:18521523-18523435 (-) // 100.0 //
Probeset : 1631099_at
Accessions : protein= NP_611690;, nucleotide= NM_137846;
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // i
FlyMine data for FBgn0034748.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 34 of 4 1.20Up
Head61 44 of 4 0.90None
Eye75 24 of 4 1.14Up
Thoracicoabdominal ganglion86 14 of 4 1.30Up
Salivary gland115 250 of 4 1.74None
Crop83 52 of 4 1.30Up
Midgut40 14 of 4 0.60Down
Tubule71 24 of 4 1.10Up
Hindgut52 34 of 4 0.80Down
Heart56 24 of 4 0.85Down
Fat body55 70 of 4 0.84None
Ovary105 24 of 4 1.60Up
Testis14 12 of 4 0.20Down
Male accessory glands136 154 of 4 2.10Up
Virgin spermatheca79 33 of 4 1.19Up
Mated spermatheca92 44 of 4 1.40Up
Adult carcass67 50 of 4 1.00None
Larval CNS110 104 of 4 1.66Up
Larval Salivary gland59 62 of 4 0.90None
Larval midgut31 23 of 4 0.48Down
Larval tubule37 13 of 4 0.60Down
Larval hindgut51 24 of 4 0.78Down
Larval fat body43 43 of 4 0.70Down
Larval trachea121 114 of 4 1.84Up
Larval carcass55 34 of 4 0.84None
S2 cells (growing)91 54 of 4 1.38Up
Whole fly66 24 of 4

Looking for FBgn0034748. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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