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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034750 through 18771 annotations produced 1 hits



(CG3732):

Annotation Number : CG3732
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034750
Gbrowse : chr2R:18526309-18527668 (-) // 100.0 //
Probeset : 1625017_at
Accessions : protein= NP_611692;, nucleotide= NM_137848;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0034750.
BDGP gene expression has embryonic in situ data for CG3732: 26 pix of staining in 20 body parts.
VDRC has 1 RNAi stocks for FBgn0034750 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain149 ± 104 of 4 1.80Up
Head86 ± 24 of 4 1.00None
Eye110 ± 74 of 4 1.35None
Thoracicoabdominal ganglion131 ± 94 of 4 1.60Up
Salivary gland80 ± 64 of 4 0.98None
Crop96 ± 34 of 4 1.20None
Midgut66 ± 64 of 4 0.80None
Tubule34 ± 24 of 4 0.40Down
Hindgut70 ± 54 of 4 0.90None
Heart57 ± 54 of 4 0.70None
Fat body71 ± 84 of 4 0.86None
Ovary186 ± 34 of 4 2.30Up
Testis72 ± 54 of 4 0.90None
Male accessory glands110 ± 24 of 4 1.30Up
Virgin spermatheca61 ± 34 of 4 0.74None
Mated spermatheca66 ± 34 of 4 0.81None
Adult carcass55 ± 64 of 4 0.70None
Larval CNS306 ± 244 of 4 3.73Up
Larval Salivary gland84 ± 04 of 4 1.03None
Larval midgut60 ± 44 of 4 0.74None
Larval tubule29 ± 54 of 4 0.40Down
Larval hindgut71 ± 34 of 4 0.86None
Larval fat body45 ± 34 of 4 0.60Down
Larval trachea104 ± 44 of 4 1.27None
Larval carcass96 ± 64 of 4 1.17None
S2 cells (growing)121 ± 44 of 4 1.47Up
Whole fly82 ± 84 of 4

Looking for FBgn0034750. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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