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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034753 through 18771 annotations produced 1 hits



(CG2852):

Annotation Number : CG2852
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034753
Gbrowse : chr2R:18532445-18533851 (-) // 100.0 //
Probeset : 1624611_a_at
Accessions : protein= NP_611695;, nucleotide= NM_137851;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from d
Interpro : 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence or structural similarity /// 0003755 /
FlyMine data for FBgn0034753.
BioGrid reports that CG2852 interacts with CG2865 CG5094 CG8219 CG9283 .
VDRC has 2 RNAi stocks for FBgn0034753 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2289 614 of 4 1.00None
Head2219 464 of 4 1.00None
Eye1565 864 of 4 0.71Down
Thoracicoabdominal ganglion2835 604 of 4 1.30Up
Salivary gland1733 584 of 4 0.79Down
Crop1349 154 of 4 0.60Down
Midgut1273 204 of 4 0.60Down
Tubule1076 604 of 4 0.50Down
Hindgut2565 974 of 4 1.20Up
Heart2290 924 of 4 1.04None
Fat body2951 3934 of 4 1.34Up
Ovary2471 224 of 4 1.10Up
Testis1127 304 of 4 0.50Down
Male accessory glands7626 1504 of 4 3.50Up
Virgin spermatheca2738 964 of 4 1.25Up
Mated spermatheca2711 1084 of 4 1.23Up
Adult carcass2087 1004 of 4 1.00None
Larval CNS2342 944 of 4 1.07None
Larval Salivary gland2066 674 of 4 0.94None
Larval midgut1293 894 of 4 0.59Down
Larval tubule2074 464 of 4 0.90None
Larval hindgut3947 1094 of 4 1.80Up
Larval fat body5080 4434 of 4 2.30Up
Larval trachea3920 954 of 4 1.79Up
Larval carcass2710 1144 of 4 1.23Up
S2 cells (growing)2594 414 of 4 1.18Up
Whole fly2196 474 of 4

Looking for FBgn0034753. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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