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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034758 through 18771 annotations produced 1 hits



():

Annotation Number : CG13510
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2R:18545409-18547215 (+) // 100.0 //
Probeset : 1638487_at
Accessions : protein= NP_611702;, nucleotide= NM_137858;
Interpro : 0005515 // protein binding // inferred from physical interaction
BioGrid reports that CG13510 interacts with CG15403 CG32796 CG13760 CG13989 CG14089 CG15293 CG2540 CG2788 CG5501 CG3114 CG31546 CG3186 CG31958 CG33198 CG3469 CG17420 CG4276 CG5171 CG5276 CG6058 CG6199 CG6803 CG7134 CG8023 CG8186 CG9594 CG9610 CG9986 Dmel CR32162 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.20Down
Head6 12 of 4 0.30Down
Eye9 14 of 4 0.43Down
Thoracicoabdominal ganglion6 12 of 4 0.30Down
Salivary gland91 54 of 4 3.96Up
Crop19 14 of 4 0.80None
Midgut195 134 of 4 8.50Up
Tubule70 134 of 4 3.00Up
Hindgut30 14 of 4 1.30None
Heart3 11 of 4 0.13Down
Fat body6 30 of 4 0.26Down
Ovary3 10 of 4 0.10Down
Testis8 13 of 4 0.40Down
Male accessory glands57 54 of 4 2.50Up
Virgin spermatheca11 20 of 4 0.50Down
Mated spermatheca11 10 of 4 0.51Down
Adult carcass7 10 of 4 0.30Down
Larval CNS2 10 of 4 0.11Down
Larval Salivary gland31 44 of 4 1.37None
Larval midgut301 334 of 413.07Up
Larval tubule113 114 of 4 4.90Up
Larval hindgut35 74 of 4 1.53None
Larval fat body9 30 of 4 0.40Down
Larval trachea5 20 of 4 0.22Down
Larval carcass11 21 of 4 0.50Down
S2 cells (growing)4 00 of 4 0.21Down
Whole fly23 34 of 4

Looking for FBgn0034758. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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