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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034759 through 18771 annotations produced 1 hits



(CG13511):

Annotation Number : CG13511
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034759
Gbrowse : chr2R:18547216-18547643 (+) // 100.0 //
Probeset : 1637388_at
Accessions : protein= NP_611701; /// NP_611702;, nucleotide= NM_137857; /// NM_137858;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034759.
BioGrid reports that CG13511 interacts with CG13731 CG18681 CG31245 .
VDRC has 2 RNAi stocks for FBgn0034759 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head4 ± 00 of 4 0.30None
Eye3 ± 10 of 4 0.32None
Thoracicoabdominal ganglion3 ± 00 of 4 0.30None
Salivary gland26 ± 51 of 4 2.24None
Crop9 ± 10 of 4 0.80None
Midgut128 ± 54 of 410.80Up
Tubule61 ± 154 of 4 5.20Up
Hindgut16 ± 13 of 4 1.40None
Heart3 ± 10 of 4 0.29None
Fat body7 ± 20 of 4 0.64None
Ovary0 ± 00 of 4 0.10Down
Testis18 ± 14 of 4 1.60None
Male accessory glands9 ± 20 of 4 0.80None
Virgin spermatheca6 ± 21 of 4 0.54None
Mated spermatheca8 ± 10 of 4 0.72None
Adult carcass2 ± 00 of 4 0.20None
Larval CNS1 ± 00 of 4 0.12None
Larval Salivary gland24 ± 00 of 4 2.10Up
Larval midgut164 ± 124 of 413.87Up
Larval tubule45 ± 24 of 4 3.90Up
Larval hindgut21 ± 24 of 4 1.77None
Larval fat body11 ± 10 of 4 1.00None
Larval trachea4 ± 50 of 4 0.41None
Larval carcass4 ± 10 of 4 0.39None
S2 cells (growing)0 ± 00 of 4 0.06Down
Whole fly11 ± 31 of 4

Looking for FBgn0034759. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime