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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034761 through 18771 annotations produced 1 hits



(CG4250):

Annotation Number : CG4250
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034761
Gbrowse : chr2R:18551192-18552009 (+) // 100.0 //
Probeset : 1623364_at
Accessions : protein= NP_611703;, nucleotide= NM_137859;
FlyMine data for FBgn0034761.
BioGrid reports that CG4250 interacts with CG9653 .
VDRC has 3 RNAi stocks for FBgn0034761 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain207 ± 194 of 4 0.70None
Head1667 ± 1054 of 4 5.80Up
Eye501 ± 874 of 4 1.75None
Thoracicoabdominal ganglion115 ± 84 of 4 0.40Down
Salivary gland33 ± 91 of 4 0.12Down
Crop52 ± 54 of 4 0.20Down
Midgut55 ± 30 of 4 0.20Down
Tubule50 ± 63 of 4 0.20Down
Hindgut28 ± 04 of 4 0.10Down
Heart3750 ± 2434 of 413.06Up
Fat body309 ± 864 of 4 1.08None
Ovary94 ± 94 of 4 0.30Down
Testis113 ± 34 of 4 0.40Down
Male accessory glands9 ± 20 of 4 0.00Down
Virgin spermatheca262 ± 494 of 4 0.92None
Mated spermatheca294 ± 644 of 4 1.03None
Adult carcass1046 ± 1214 of 4 3.60Up
Larval CNS134 ± 434 of 4 0.47Down
Larval Salivary gland43 ± 64 of 4 0.15Down
Larval midgut82 ± 84 of 4 0.29Down
Larval tubule161 ± 354 of 4 0.60Down
Larval hindgut34 ± 34 of 4 0.12Down
Larval fat body705 ± 604 of 4 2.50Up
Larval trachea113 ± 804 of 4 0.39Down
Larval carcass198 ± 54 of 4 0.69None
S2 cells (growing)129 ± 34 of 4 0.45Down
Whole fly287 ± 304 of 4

Looking for FBgn0034761. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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