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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034766 through 18771 annotations produced 2 hits



Odorant-binding protein 59a (Obp59a):

Annotation Number : CG13517
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034766
Gbrowse : chr2R:18590221-18590911 (+) // 100.0 //
Probeset : 1627935_a_at
Accessions : protein= NP_788429;, nucleotide= NM_176249;
Interpro : 0005549 // odorant binding // inferred from electronic annotation /// 0005549 // odorant binding // not recorded
FlyMine data for FBgn0034766.
VDRC has 2 RNAi stocks for FBgn0034766 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20None
Head121 ± 104 of 415.00Up
Eye17 ± 82 of 4 2.14None
Thoracicoabdominal ganglion1 ± 00 of 4 0.20None
Salivary gland4 ± 20 of 4 0.54None
Crop2 ± 10 of 4 0.20None
Midgut5 ± 10 of 4 0.70None
Tubule1 ± 00 of 4 0.20Down
Hindgut2 ± 10 of 4 0.30None
Heart1 ± 00 of 4 0.18None
Fat body4 ± 20 of 4 0.50None
Ovary1 ± 00 of 4 0.20None
Testis1 ± 00 of 4 0.20None
Male accessory glands6 ± 20 of 4 0.80None
Virgin spermatheca3 ± 10 of 4 0.37None
Mated spermatheca2 ± 00 of 4 0.26None
Adult carcass5 ± 20 of 4 0.70None
Larval CNS1 ± 00 of 4 0.13None
Larval Salivary gland2 ± 00 of 4 0.26None
Larval midgut3 ± 10 of 4 0.40None
Larval tubule5 ± 20 of 4 0.70None
Larval hindgut1 ± 00 of 4 0.17None
Larval fat body6 ± 10 of 4 0.80None
Larval trachea2 ± 20 of 4 0.31None
Larval carcass4 ± 10 of 4 0.51None
S2 cells (growing)3 ± 10 of 4 0.39None
Whole fly8 ± 21 of 4



():

Annotation Number : CG13517
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2R:18590221-18590911 (+) // 100.0 //
Probeset : 1630480_at
Accessions : protein= NP_788429;, nucleotide= NM_176249;
Interpro : 0005549 // odorant binding // inferred from electronic annotation /// 0005549 // odorant binding // not recorded


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.70None
Head1 ± 00 of 4 1.90None
Eye1 ± 00 of 4 1.05None
Thoracicoabdominal ganglion0 ± 00 of 4 0.60None
Salivary gland1 ± 00 of 4 1.45None
Crop0 ± 00 of 4 0.80None
Midgut1 ± 00 of 4 1.40None
Tubule0 ± 00 of 4 0.90None
Hindgut2 ± 00 of 4 2.00None
Heart2 ± 10 of 4 2.75None
Fat body0 ± 00 of 4 0.55None
Ovary0 ± 00 of 4 0.30None
Testis1 ± 00 of 4 1.20None
Male accessory glands1 ± 10 of 4 1.90None
Virgin spermatheca1 ± 00 of 4 1.33None
Mated spermatheca2 ± 00 of 4 2.20None
Adult carcass0 ± 00 of 4 0.90None
Larval CNS0 ± 00 of 4 0.50None
Larval Salivary gland1 ± 00 of 4 1.40None
Larval midgut1 ± 00 of 4 0.95None
Larval tubule1 ± 00 of 4 1.30None
Larval hindgut1 ± 00 of 4 0.98None
Larval fat body0 ± 00 of 4 0.90None
Larval trachea1 ± 00 of 4 1.27None
Larval carcass0 ± 00 of 4 0.85None
S2 cells (growing)0 ± 00 of 4 0.65None
Whole fly1 ± 00 of 4

Looking for FBgn0034766. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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