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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034769 through 18771 annotations produced 1 hits



Odorant-binding protein 58c (Obp58c):

Annotation Number : CG13524
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034769
Gbrowse : chr2R:18593449-18594165 (-) // 100.0 //
Probeset : 1637272_at
Accessions : protein= NP_611710;, nucleotide= NM_137866;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005549 // odorant binding // inferred from electro
FlyMine data for FBgn0034769.
BioGrid reports that CG13524 interacts with CG17320 .
VDRC has 2 RNAi stocks for FBgn0034769 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 1.10None
Head4 ± 10 of 4 1.30None
Eye3 ± 10 of 4 1.00None
Thoracicoabdominal ganglion7 ± 11 of 4 2.00None
Salivary gland6 ± 10 of 4 1.70None
Crop5 ± 10 of 4 1.60None
Midgut3 ± 10 of 4 0.90None
Tubule7 ± 00 of 4 2.00Up
Hindgut6 ± 20 of 4 1.90None
Heart3 ± 10 of 4 1.06None
Fat body5 ± 30 of 4 1.42None
Ovary2 ± 10 of 4 0.60None
Testis4 ± 10 of 4 1.40None
Male accessory glands9 ± 21 of 4 2.50None
Virgin spermatheca1 ± 00 of 4 0.51None
Mated spermatheca2 ± 10 of 4 0.72None
Adult carcass2 ± 00 of 4 0.60None
Larval CNS4 ± 10 of 4 1.15None
Larval Salivary gland8 ± 40 of 4 2.34None
Larval midgut3 ± 10 of 4 1.06None
Larval tubule10 ± 13 of 4 2.90Up
Larval hindgut3 ± 10 of 4 1.10None
Larval fat body4 ± 10 of 4 1.10None
Larval trachea4 ± 30 of 4 1.35None
Larval carcass8 ± 21 of 4 2.37None
S2 cells (growing)4 ± 00 of 4 1.18None
Whole fly3 ± 10 of 4

Looking for FBgn0034769. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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