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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034776 through 18771 annotations produced 1 hits


(CG13527):

Annotation Number : CG13527
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034776
Gbrowse : chr2R:18651235-18652369 (+) // 100.0 //
Probeset : 1640751_at
Accessions : protein= NP_611716;, nucleotide= NM_137872;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0034776.
Homophila reports that CG13527 is a close match (7e-11) to human gene CTRC;CLCR (NP_009203), a gene associated with {Pancreatitis, chronic, susceptibilty to}, 167800 (3).
VDRC has 1 RNAi stocks for FBgn0034776 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head4 ± 10 of 4 0.10Down
Eye3 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.10Down
Salivary gland14 ± 60 of 4 0.22Down
Crop6 ± 00 of 4 0.10Down
Midgut15 ± 02 of 4 0.20Down
Tubule6 ± 00 of 4 0.10Down
Hindgut3 ± 00 of 4 0.10Down
Heart3 ± 10 of 4 0.05Down
Fat body13 ± 43 of 4 0.21Down
Ovary3 ± 10 of 4 0.10Down
Testis698 ± 344 of 410.50Up
Male accessory glands7 ± 00 of 4 0.10Down
Virgin spermatheca8 ± 11 of 4 0.13Down
Mated spermatheca11 ± 10 of 4 0.17Down
Adult carcass13 ± 20 of 4 0.20Down
Larval CNS4 ± 10 of 4 0.07Down
Larval Salivary gland3 ± 10 of 4 0.05Down
Larval midgut11 ± 11 of 4 0.17Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut6 ± 10 of 4 0.09Down
Larval fat body41 ± 203 of 4 0.60None
Larval trachea6 ± 21 of 4 0.10Down
Larval carcass9 ± 00 of 4 0.14Down
S2 cells (growing)4 ± 10 of 4 0.07Down
Whole fly66 ± 54 of 4

Looking for FBgn0034776. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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