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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034783 through 18771 annotations produced 1 hits



(CG9825):

Annotation Number : CG9825
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034783
Gbrowse : chr2R:18724885-18726820 (+) // 100.0 //
Probeset : 1629164_at
Accessions : protein= NP_611723;, nucleotide= NM_137879;
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0034783.
BDGP gene expression has embryonic in situ data for CG9825: 4 pix of staining in 1 body parts.
Homophila reports that CG9825 is a close match (4e-54) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
VDRC has 6 RNAi stocks for FBgn0034783 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye2 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion6 ± 21 of 4 0.20Down
Salivary gland3 ± 10 of 4 0.08Down
Crop3 ± 10 of 4 0.10Down
Midgut300 ± 394 of 4 8.50Up
Tubule3 ± 00 of 4 0.10Down
Hindgut8 ± 21 of 4 0.20Down
Heart1 ± 00 of 4 0.03Down
Fat body4 ± 30 of 4 0.13Down
Ovary2 ± 00 of 4 0.10Down
Testis121 ± 64 of 4 3.40Up
Male accessory glands5 ± 21 of 4 0.20Down
Virgin spermatheca2 ± 00 of 4 0.06Down
Mated spermatheca3 ± 00 of 4 0.09Down
Adult carcass8 ± 20 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.08Down
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut973 ± 314 of 427.58Up
Larval tubule4 ± 20 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.14Down
Larval fat body10 ± 20 of 4 0.30Down
Larval trachea2 ± 10 of 4 0.07Down
Larval carcass4 ± 10 of 4 0.13Down
S2 cells (growing)4 ± 10 of 4 0.12Down
Whole fly35 ± 34 of 4

Looking for FBgn0034783. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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