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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034784 through 18771 annotations produced 1 hits


Annotation Number : CG9826
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034784
Gbrowse : chr2R:18728357-18729988 (+) // 100.0 //
Probeset : 1625203_at
Accessions : protein= NP_611724; /// NP_995924;, nucleotide= NM_137880; /// NM_206202;
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0034784.
Homophila reports that CG9826 is a close match (2e-52) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
VDRC has 2 RNAi stocks for FBgn0034784 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head1 00 of 4 0.10Down
Eye1 00 of 4 0.08Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland27 61 of 4 1.36None
Crop1 00 of 4 0.10Down
Midgut198 74 of 4 9.90Up
Tubule2 00 of 4 0.10Down
Hindgut1 00 of 4 0.10Down
Heart0 00 of 4 0.03Down
Fat body3 10 of 4 0.17Down
Ovary2 00 of 4 0.10Down
Testis3 10 of 4 0.20Down
Male accessory glands2 20 of 4 0.10Down
Virgin spermatheca29 14 of 4 1.46None
Mated spermatheca30 24 of 4 1.50None
Adult carcass7 30 of 4 0.40Down
Larval CNS1 20 of 4 0.10Down
Larval Salivary gland92 244 of 4 4.61None
Larval midgut729 464 of 436.43Up
Larval tubule3 00 of 4 0.20Down
Larval hindgut6 10 of 4 0.34Down
Larval fat body3 10 of 4 0.20Down
Larval trachea0 00 of 4 0.04Down
Larval carcass2 00 of 4 0.12Down
S2 cells (growing)2 00 of 4 0.12Down
Whole fly20 33 of 4

Looking for FBgn0034784. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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