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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034786 through 18771 annotations produced 1 hits



(CG13531):

Annotation Number : CG13531
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034786
Gbrowse : chr2R:18735354-18741220 (-) // 100.0 //
Probeset : 1628662_at
Accessions : protein= NP_611726;, nucleotide= NM_137882;
FlyMine data for FBgn0034786.
Homophila reports that CG13531 is a close match (6e-27) to human gene FLJ21439;KIAA1840;SPG11 (NP_079413), a gene associated with Spastic paraplegia-11, 604360 (3).
BioGrid reports that CG13531 interacts with Dmel CG14425 .
VDRC has 2 RNAi stocks for FBgn0034786 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 ± 34 of 4 0.60Down
Head99 ± 54 of 4 0.90None
Eye90 ± 74 of 4 0.79None
Thoracicoabdominal ganglion62 ± 34 of 4 0.50Down
Salivary gland254 ± 54 of 4 2.22Up
Crop113 ± 34 of 4 1.00None
Midgut133 ± 14 of 4 1.20None
Tubule159 ± 54 of 4 1.40Up
Hindgut111 ± 54 of 4 1.00None
Heart176 ± 94 of 4 1.54Up
Fat body233 ± 54 of 4 2.04Up
Ovary175 ± 44 of 4 1.50Up
Testis59 ± 34 of 4 0.50Down
Male accessory glands170 ± 44 of 4 1.50Up
Virgin spermatheca545 ± 194 of 4 4.77Up
Mated spermatheca357 ± 274 of 4 3.12Up
Adult carcass155 ± 44 of 4 1.40Up
Larval CNS86 ± 54 of 4 0.75Down
Larval Salivary gland188 ± 84 of 4 1.65Up
Larval midgut266 ± 344 of 4 2.33Up
Larval tubule462 ± 84 of 4 4.00Up
Larval hindgut187 ± 174 of 4 1.64Up
Larval fat body486 ± 304 of 4 4.20Up
Larval trachea114 ± 44 of 4 1.00None
Larval carcass116 ± 84 of 4 1.02None
S2 cells (growing)97 ± 14 of 4 0.85None
Whole fly114 ± 74 of 4

Looking for FBgn0034786. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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