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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034788 through 18771 annotations produced 1 hits


Annotation Number : CG13532
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034788
Gbrowse : chr2R:18758814-18761956 (+) // 100.0 //
Probeset : 1633162_at
Accessions : protein= NP_611728;, nucleotide= NM_137884;
FlyMine data for FBgn0034788.
BDGP gene expression has embryonic in situ data for CG13532: 17 pix of staining in 7 body parts.
TRiP has 1 RNAi stocks for FBgn0034788 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034788 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain222 24 of 436.20Up
Head66 54 of 410.80Up
Eye71 154 of 411.67Up
Thoracicoabdominal ganglion198 54 of 432.30Up
Salivary gland14 52 of 4 2.27None
Crop5 00 of 4 1.00None
Midgut3 10 of 4 0.60None
Tubule4 00 of 4 0.70Down
Hindgut4 00 of 4 0.70Down
Heart3 10 of 4 0.59None
Fat body10 42 of 4 1.66None
Ovary0 00 of 4 0.10Down
Testis4 00 of 4 0.70Down
Male accessory glands10 31 of 4 1.70None
Virgin spermatheca7 10 of 4 1.15None
Mated spermatheca9 22 of 4 1.60None
Adult carcass2 10 of 4 0.40Down
Larval CNS236 154 of 438.50Up
Larval Salivary gland7 11 of 4 1.14None
Larval midgut5 10 of 4 0.89None
Larval tubule2 00 of 4 0.40Down
Larval hindgut2 00 of 4 0.35Down
Larval fat body4 20 of 4 0.60None
Larval trachea5 31 of 4 0.88None
Larval carcass8 10 of 4 1.38None
S2 cells (growing)3 10 of 4 0.62None
Whole fly6 01 of 4

Looking for FBgn0034788. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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