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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034792 through 18771 annotations produced 1 hits



(CG3499):

Annotation Number : CG3499
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034792
Gbrowse : chr2R:18770500-18773855 (-) // 100.0 //
Probeset : 1638394_at
Accessions : protein= NP_726263;, nucleotide= NM_166568;
Pathway : 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0016020 // membrane // in
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004176 // ATP-dependent peptidase activity //
FlyMine data for FBgn0034792.
BDGP gene expression has embryonic in situ data for CG3499: 11 pix of staining in 8 body parts.
Homophila reports that CG3499 is a close match (2e-11) to human gene BCS1L;BJS;FLNMS;GRACILE;PTD (NP_004319), a gene associated with Bjornstad syndrome, 262000 (3);GRACILE syndrome, 603358 (3);Leigh syndrome, 256000 (3);Mitochondrial complex III deficiency, 124000 (3).
BioGrid reports that CG3499 interacts with CG7776 .
VDRC has 3 RNAi stocks for FBgn0034792 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain185 ± 14 of 4 0.90None
Head119 ± 64 of 4 0.60Down
Eye146 ± 44 of 4 0.73Down
Thoracicoabdominal ganglion167 ± 34 of 4 0.80Down
Salivary gland176 ± 24 of 4 0.88None
Crop136 ± 54 of 4 0.70Down
Midgut104 ± 34 of 4 0.50Down
Tubule203 ± 44 of 4 1.00None
Hindgut146 ± 44 of 4 0.70Down
Heart156 ± 24 of 4 0.78Down
Fat body111 ± 54 of 4 0.56Down
Ovary229 ± 84 of 4 1.10None
Testis874 ± 304 of 4 4.40Up
Male accessory glands160 ± 74 of 4 0.80Down
Virgin spermatheca91 ± 24 of 4 0.46Down
Mated spermatheca109 ± 14 of 4 0.55Down
Adult carcass153 ± 54 of 4 0.80Down
Larval CNS189 ± 114 of 4 0.94None
Larval Salivary gland262 ± 144 of 4 1.31Up
Larval midgut93 ± 34 of 4 0.47Down
Larval tubule126 ± 44 of 4 0.60Down
Larval hindgut170 ± 24 of 4 0.85None
Larval fat body137 ± 244 of 4 0.70None
Larval trachea160 ± 94 of 4 0.80Down
Larval carcass111 ± 34 of 4 0.56Down
S2 cells (growing)290 ± 84 of 4 1.45Up
Whole fly200 ± 104 of 4

Looking for FBgn0034792. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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