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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034794 through 18771 annotations produced 1 hits



():

Annotation Number : CG3495
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : "GDP-4-keto-6-deoxy-D-mannose 3
Gbrowse : CG3495-RA
Probeset : 1626180_at
Accessions : protein= FBgn0034794, nucleotide= 37638
GeneOntology : NM_137890
FlyMine data for "GDP-4-keto-6-deoxy-D-mannose 3.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 64 of 4 0.50Down
Head83 ± 54 of 4 0.50Down
Eye57 ± 54 of 4 0.35Down
Thoracicoabdominal ganglion87 ± 54 of 4 0.50Down
Salivary gland141 ± 44 of 4 0.88Down
Crop99 ± 54 of 4 0.60Down
Midgut122 ± 54 of 4 0.80Down
Tubule119 ± 64 of 4 0.70Down
Hindgut105 ± 44 of 4 0.70Down
Heart78 ± 74 of 4 0.48Down
Fat body112 ± 14 of 4 0.70Down
Ovary284 ± 24 of 4 1.80Up
Testis105 ± 14 of 4 0.70Down
Male accessory glands282 ± 54 of 4 1.80Up
Virgin spermatheca112 ± 64 of 4 0.70Down
Mated spermatheca118 ± 44 of 4 0.74Down
Adult carcass96 ± 54 of 4 0.60Down
Larval CNS153 ± 114 of 4 0.95None
Larval Salivary gland225 ± 264 of 4 1.39None
Larval midgut120 ± 54 of 4 0.74Down
Larval tubule117 ± 24 of 4 0.70Down
Larval hindgut118 ± 24 of 4 0.73Down
Larval fat body166 ± 144 of 4 1.00None
Larval trachea182 ± 274 of 4 1.13None
Larval carcass151 ± 54 of 4 0.94None
S2 cells (growing)120 ± 14 of 4 0.75Down
Whole fly161 ± 54 of 4

Looking for FBgn0034794. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime