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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034800 through 18771 annotations produced 1 hits



(CG3788):

Annotation Number : CG3788
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034800
Gbrowse : chr2R:18819550-18821046 (-) // 100.0 //
Probeset : 1634995_at
Accessions : protein= NP_611738;, nucleotide= NM_137894;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004850 // uridine phosphorylase activity // i
FlyMine data for FBgn0034800.
VDRC has 2 RNAi stocks for FBgn0034800 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.10Down
Head1 ± 00 of 4 0.00Down
Eye5 ± 20 of 4 0.06Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.10Down
Salivary gland8 ± 20 of 4 0.09Down
Crop5 ± 10 of 4 0.10Down
Midgut5 ± 20 of 4 0.10Down
Tubule6 ± 00 of 4 0.10Down
Hindgut17 ± 20 of 4 0.20Down
Heart1 ± 00 of 4 0.02Down
Fat body2 ± 10 of 4 0.02Down
Ovary52 ± 54 of 4 0.50Down
Testis942 ± 404 of 4 9.50Up
Male accessory glands7 ± 20 of 4 0.10Down
Virgin spermatheca6 ± 10 of 4 0.06Down
Mated spermatheca4 ± 10 of 4 0.04Down
Adult carcass3 ± 00 of 4 0.00Down
Larval CNS41 ± 104 of 4 0.42Down
Larval Salivary gland22 ± 31 of 4 0.23Down
Larval midgut4 ± 20 of 4 0.05Down
Larval tubule4 ± 20 of 4 0.00Down
Larval hindgut29 ± 44 of 4 0.29Down
Larval fat body91 ± 353 of 4 0.90None
Larval trachea43 ± 74 of 4 0.44Down
Larval carcass23 ± 30 of 4 0.23Down
S2 cells (growing)84 ± 44 of 4 0.84Down
Whole fly99 ± 34 of 4

Looking for FBgn0034800. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime