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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034802 through 18771 annotations produced 1 hits

anon-fast-evolving-1B4 (CG3800):

Annotation Number : CG3800
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034802
Gbrowse : chr2R:18822095-18824453 (-) // 100.0 //
Probeset : 1640915_at
Accessions : protein= NP_611739;, nucleotide= NM_137895;
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0034802.
BDGP gene expression has embryonic in situ data for CG3800: 12 pix of staining in 13 body parts.
Homophila reports that CG3800 is a close match (6e-13) to human gene CNBP1;DM2;PROMM;ZNF9 (NP_003409), a gene associated with Myotonic dystrophy, type 2, 602668 (3).
BioGrid reports that CG3800 interacts with CG6578 CG7076 CG9398 .
VDRC has 3 RNAi stocks for FBgn0034802 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain791 154 of 4 0.80None
Head1041 1244 of 4 1.00None
Eye1793 844 of 4 1.71Up
Thoracicoabdominal ganglion940 404 of 4 0.90None
Salivary gland660 194 of 4 0.63Down
Crop935 184 of 4 0.90None
Midgut363 134 of 4 0.30Down
Tubule729 274 of 4 0.70Down
Hindgut721 64 of 4 0.70Down
Heart627 94 of 4 0.60Down
Fat body674 514 of 4 0.64Down
Ovary1903 394 of 4 1.80Up
Testis404 124 of 4 0.40Down
Male accessory glands1873 454 of 4 1.80Up
Virgin spermatheca1407 434 of 4 1.34Up
Mated spermatheca1433 564 of 4 1.37Up
Adult carcass622 374 of 4 0.60Down
Larval CNS2026 1174 of 4 1.93Up
Larval Salivary gland1393 354 of 4 1.33Up
Larval midgut291 54 of 4 0.28Down
Larval tubule442 284 of 4 0.40Down
Larval hindgut1049 794 of 4 1.00None
Larval fat body736 604 of 4 0.70Down
Larval trachea1824 2054 of 4 1.74Up
Larval carcass1148 1024 of 4 1.10None
S2 cells (growing)613 234 of 4 0.59Down
Whole fly1047 534 of 4

Looking for FBgn0034802. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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