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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034803 through 18771 annotations produced 1 hits



(CG9849):

Annotation Number : CG9849
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034803
Gbrowse : chr2R:18824801-18826557 (+) // 100.0 //
Probeset : 1638453_at
Accessions : protein= NP_611740;, nucleotide= NM_137896;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
FlyMine data for FBgn0034803.
BDGP gene expression has embryonic in situ data for CG9849: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0034803 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain240 ± 64 of 4 1.20Up
Head219 ± 164 of 4 1.10None
Eye280 ± 134 of 4 1.41Up
Thoracicoabdominal ganglion268 ± 144 of 4 1.40Up
Salivary gland585 ± 114 of 4 2.95Up
Crop182 ± 174 of 4 0.90None
Midgut374 ± 54 of 4 1.90Up
Tubule177 ± 94 of 4 0.90Down
Hindgut153 ± 64 of 4 0.80Down
Heart313 ± 74 of 4 1.58Up
Fat body324 ± 334 of 4 1.63Up
Ovary291 ± 44 of 4 1.50Up
Testis146 ± 44 of 4 0.70Down
Male accessory glands537 ± 124 of 4 2.70Up
Virgin spermatheca480 ± 234 of 4 2.42Up
Mated spermatheca568 ± 434 of 4 2.87Up
Adult carcass238 ± 74 of 4 1.20Up
Larval CNS185 ± 84 of 4 0.93None
Larval Salivary gland406 ± 144 of 4 2.05Up
Larval midgut293 ± 124 of 4 1.48Up
Larval tubule168 ± 94 of 4 0.90None
Larval hindgut154 ± 64 of 4 0.78Down
Larval fat body197 ± 194 of 4 1.00None
Larval trachea158 ± 124 of 4 0.80Down
Larval carcass143 ± 84 of 4 0.72Down
S2 cells (growing)259 ± 74 of 4 1.31Up
Whole fly198 ± 104 of 4

Looking for FBgn0034803. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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