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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034804 through 18771 annotations produced 1 hits



/// (CG3831 /// DmirCG3831):

Annotation Number : CG3831
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034804
Gbrowse : chr2R:18826507-18828467 (-) // 100.0 //
Probeset : 1634733_at
Accessions : protein= NP_611741;, nucleotide= NM_137897;
FlyMine data for FBgn0034804.
BDGP gene expression has embryonic in situ data for CG3831: 38 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0034804 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 24 of 4 0.10Down
Head45 ± 24 of 4 0.20Down
Eye21 ± 14 of 4 0.11Down
Thoracicoabdominal ganglion37 ± 24 of 4 0.20Down
Salivary gland9 ± 30 of 4 0.05Down
Crop2 ± 00 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule24 ± 71 of 4 0.10Down
Hindgut7 ± 10 of 4 0.00Down
Heart238 ± 94 of 4 1.25Up
Fat body51 ± 94 of 4 0.27Down
Ovary414 ± 174 of 4 2.20Up
Testis43 ± 24 of 4 0.20Down
Male accessory glands5 ± 20 of 4 0.00Down
Virgin spermatheca66 ± 44 of 4 0.35Down
Mated spermatheca77 ± 74 of 4 0.41Down
Adult carcass61 ± 63 of 4 0.30Down
Larval CNS67 ± 94 of 4 0.35Down
Larval Salivary gland13 ± 21 of 4 0.07Down
Larval midgut10 ± 10 of 4 0.05Down
Larval tubule43 ± 64 of 4 0.20Down
Larval hindgut28 ± 24 of 4 0.15Down
Larval fat body158 ± 104 of 4 0.80Down
Larval trachea16 ± 14 of 4 0.09Down
Larval carcass57 ± 44 of 4 0.30Down
S2 cells (growing)43 ± 34 of 4 0.23Down
Whole fly191 ± 64 of 4

Looking for FBgn0034804. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime