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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034807 through 18771 annotations produced 1 hits


(CG9897):

Annotation Number : CG9897
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034807
Gbrowse : chr2R:18873052-18873851 (-) // 100.0 //
Probeset : 1640407_at
Accessions : protein= NP_611744;, nucleotide= NM_137900;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0034807.
Homophila reports that CG9897 is a close match (5e-11) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_076927), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).
VDRC has 2 RNAi stocks for FBgn0034807 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.02Down
Crop4 ± 10 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut4 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.02Down
Fat body7 ± 90 of 4 0.09Down
Ovary1 ± 00 of 4 0.00Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca2934 ± 1814 of 434.92Up
Mated spermatheca3108 ± 2334 of 436.99Up
Adult carcass16 ± 91 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut10 ± 10 of 4 0.12Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.03Down
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.02Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)2 ± 10 of 4 0.03Down
Whole fly84 ± 124 of 4

Looking for FBgn0034807. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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