Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
About & FAQ
Top 50
Original data
Interesting meta-analysis

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034808 through 18771 annotations produced 1 hits


Annotation Number : CG9896
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034808
Gbrowse : chr2R:18881185-18886406 (-) // 100.0 //
Probeset : 1625833_at
Accessions : protein= NP_611745;, nucleotide= NM_137901;
FlyMine data for FBgn0034808.
BDGP gene expression has embryonic in situ data for CG9896: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034808 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain686 204 of 4 2.00Up
Head188 144 of 4 0.50Down
Eye26 14 of 4 0.08Down
Thoracicoabdominal ganglion211 94 of 4 0.60Down
Salivary gland12 20 of 4 0.04Down
Crop89 74 of 4 0.30Down
Midgut1646 304 of 4 4.70Up
Tubule7 20 of 4 0.00Down
Hindgut59 34 of 4 0.20Down
Heart526 444 of 4 1.50Up
Fat body902 1464 of 4 2.57Up
Ovary351 54 of 4 1.00None
Testis4 11 of 4 0.00Down
Male accessory glands888 364 of 4 2.50Up
Virgin spermatheca14 30 of 4 0.04Down
Mated spermatheca15 23 of 4 0.04Down
Adult carcass630 634 of 4 1.80Up
Larval CNS34 34 of 4 0.10Down
Larval Salivary gland3 10 of 4 0.01Down
Larval midgut400 244 of 4 1.14None
Larval tubule4 10 of 4 0.00Down
Larval hindgut14 14 of 4 0.04Down
Larval fat body3 00 of 4 0.00Down
Larval trachea76 254 of 4 0.22Down
Larval carcass47 84 of 4 0.13Down
S2 cells (growing)1 00 of 4 0.00Down
Whole fly351 184 of 4

Looking for FBgn0034808. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime