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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034814 through 18771 annotations produced 1 hits



(CG9890):

Annotation Number : CG9890
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034814
Gbrowse : chr2R:18950267-18951787 (-) // 100.0 //
Probeset : 1630982_at
Accessions : protein= NP_611750;, nucleotide= NM_137906;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0034814.
VDRC has 2 RNAi stocks for FBgn0034814 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 ± 24 of 4 0.60Down
Head43 ± 24 of 4 0.50Down
Eye63 ± 44 of 4 0.72Down
Thoracicoabdominal ganglion59 ± 24 of 4 0.70Down
Salivary gland54 ± 94 of 4 0.61Down
Crop78 ± 24 of 4 0.90Down
Midgut55 ± 44 of 4 0.60Down
Tubule51 ± 24 of 4 0.60Down
Hindgut52 ± 44 of 4 0.60Down
Heart46 ± 14 of 4 0.53Down
Fat body42 ± 54 of 4 0.48Down
Ovary150 ± 44 of 4 1.70Up
Testis26 ± 14 of 4 0.30Down
Male accessory glands52 ± 64 of 4 0.60Down
Virgin spermatheca65 ± 44 of 4 0.74Down
Mated spermatheca65 ± 24 of 4 0.74Down
Adult carcass55 ± 14 of 4 0.60Down
Larval CNS77 ± 44 of 4 0.88Down
Larval Salivary gland77 ± 64 of 4 0.88None
Larval midgut33 ± 24 of 4 0.37Down
Larval tubule42 ± 14 of 4 0.50Down
Larval hindgut40 ± 14 of 4 0.46Down
Larval fat body38 ± 24 of 4 0.40Down
Larval trachea74 ± 84 of 4 0.85Down
Larval carcass54 ± 54 of 4 0.61Down
S2 cells (growing)96 ± 24 of 4 1.09Up
Whole fly88 ± 24 of 4

Looking for FBgn0034814. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime