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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034816 through 18771 annotations produced 1 hits



(CG3085):

Annotation Number : CG3085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034816
Gbrowse : chr2R:18962591-18964381 (+) // 100.0 //
Probeset : 1627537_at
Accessions : protein= NP_611752;, nucleotide= NM_137908;
Pathway : 0005874 // microtubule // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034816.
BDGP gene expression has embryonic in situ data for CG3085: 18 pix of staining in 5 body parts.
BioGrid reports that CG3085 interacts with CG31534 CG33095 CG3651 CG4719 CG5272 CG6137 CG7001 CG7937 CG8193 CG8470 CG9597 CG31034 CG31362 CG33126 .
VDRC has 2 RNAi stocks for FBgn0034816 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head6 ± 10 of 4 0.00Down
Eye5 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland7 ± 30 of 4 0.06Down
Crop14 ± 21 of 4 0.10Down
Midgut13 ± 20 of 4 0.10Down
Tubule15 ± 11 of 4 0.10Down
Hindgut5 ± 10 of 4 0.00Down
Heart7 ± 21 of 4 0.06Down
Fat body11 ± 60 of 4 0.09Down
Ovary42 ± 34 of 4 0.30Down
Testis1320 ± 464 of 410.20Up
Male accessory glands14 ± 11 of 4 0.10Down
Virgin spermatheca9 ± 20 of 4 0.07Down
Mated spermatheca10 ± 30 of 4 0.08Down
Adult carcass15 ± 70 of 4 0.10Down
Larval CNS33 ± 14 of 4 0.26Down
Larval Salivary gland10 ± 10 of 4 0.08Down
Larval midgut4 ± 10 of 4 0.03Down
Larval tubule6 ± 20 of 4 0.10Down
Larval hindgut5 ± 00 of 4 0.04Down
Larval fat body180 ± 1003 of 4 1.40None
Larval trachea12 ± 72 of 4 0.10Down
Larval carcass7 ± 00 of 4 0.06Down
S2 cells (growing)8 ± 20 of 4 0.06Down
Whole fly129 ± 44 of 4

Looking for FBgn0034816. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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