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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034820 through 18771 annotations produced 1 hits



(CG13538):

Annotation Number : CG13538
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034820
Gbrowse : chr2R:18974842-18975361 (+) // 100.0 //
Probeset : 1631767_at
Accessions : protein= NP_611755;, nucleotide= NM_137911;
FlyMine data for FBgn0034820.
VDRC has 3 RNAi stocks for FBgn0034820 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head3 ± 00 of 4 0.10Down
Eye2 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.20Down
Salivary gland5 ± 20 of 4 0.19Down
Crop3 ± 10 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut5 ± 00 of 4 0.20Down
Heart1 ± 10 of 4 0.06Down
Fat body1 ± 10 of 4 0.05Down
Ovary2 ± 01 of 4 0.10Down
Testis423 ± 204 of 414.30Up
Male accessory glands4 ± 10 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.11Down
Mated spermatheca2 ± 10 of 4 0.08Down
Adult carcass2 ± 10 of 4 0.10Down
Larval CNS1 ± 11 of 4 0.06Down
Larval Salivary gland2 ± 00 of 4 0.09Down
Larval midgut4 ± 10 of 4 0.15Down
Larval tubule3 ± 00 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.07Down
Larval fat body31 ± 171 of 4 1.10None
Larval trachea5 ± 21 of 4 0.19Down
Larval carcass2 ± 11 of 4 0.07Down
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly29 ± 54 of 4

Looking for FBgn0034820. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime