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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034822 through 18771 annotations produced 1 hits



Ribosomal protein L37b (RpL37b):

Annotation Number : CG9873
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034822
Gbrowse : chr2R:18987626-18987896 (-) // 100.0 //
Probeset : 1636738_at
Accessions : protein= NP_611757;, nucleotide= NM_137913;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // non-traceable author statemen
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0034822.
VDRC has 1 RNAi stocks for FBgn0034822 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 14 of 4 0.30Down
Head11 04 of 4 0.30Down
Eye16 14 of 4 0.43Down
Thoracicoabdominal ganglion16 23 of 4 0.40Down
Salivary gland25 10 of 4 0.66Down
Crop8 21 of 4 0.20Down
Midgut11 00 of 4 0.30Down
Tubule11 01 of 4 0.30Down
Hindgut13 10 of 4 0.30Down
Heart10 12 of 4 0.27Down
Fat body29 34 of 4 0.76Down
Ovary10 21 of 4 0.30Down
Testis402 34 of 410.30Up
Male accessory glands14 50 of 4 0.40Down
Virgin spermatheca14 03 of 4 0.37Down
Mated spermatheca15 10 of 4 0.39Down
Adult carcass12 11 of 4 0.30Down
Larval CNS14 04 of 4 0.38Down
Larval Salivary gland12 11 of 4 0.31Down
Larval midgut14 20 of 4 0.38Down
Larval tubule15 03 of 4 0.40Down
Larval hindgut12 30 of 4 0.33Down
Larval fat body70 184 of 4 1.80None
Larval trachea12 51 of 4 0.31Down
Larval carcass17 30 of 4 0.45Down
S2 cells (growing)18 12 of 4 0.49Down
Whole fly38 24 of 4

Looking for FBgn0034822. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime