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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034826 through 18771 annotations produced 1 hits



(CG13544):

Annotation Number : CG13544
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034826
Gbrowse : chr2R:19026598-19028107 (-) // 100.0 //
Probeset : 1640852_at
Accessions : protein= NP_611761;, nucleotide= NM_137917;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0032027 // myosin light chain binding // inferred f
FlyMine data for FBgn0034826.
BDGP gene expression has embryonic in situ data for CG13544: 2 pix of staining in 1 body parts.
BioGrid reports that CG13544 interacts with CG5024 CG9035 .
VDRC has 3 RNAi stocks for FBgn0034826 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head1 10 of 4 0.00Down
Eye1 10 of 4 0.03Down
Thoracicoabdominal ganglion4 20 of 4 0.10Down
Salivary gland7 30 of 4 0.11Down
Crop6 10 of 4 0.10Down
Midgut1 00 of 4 0.00Down
Tubule4 00 of 4 0.10Down
Hindgut3 10 of 4 0.00Down
Heart3 10 of 4 0.05Down
Fat body4 20 of 4 0.07Down
Ovary2 00 of 4 0.00Down
Testis859 384 of 412.70Up
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca3 10 of 4 0.05Down
Mated spermatheca6 20 of 4 0.09Down
Adult carcass10 30 of 4 0.20Down
Larval CNS3 10 of 4 0.05Down
Larval Salivary gland1 00 of 4 0.02Down
Larval midgut1 00 of 4 0.02Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut3 00 of 4 0.05Down
Larval fat body98 503 of 4 1.40None
Larval trachea4 50 of 4 0.07Down
Larval carcass4 10 of 4 0.07Down
S2 cells (growing)2 00 of 4 0.03Down
Whole fly67 14 of 4

Looking for FBgn0034826. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime