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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034829 through 18771 annotations produced 1 hits



(CG9899):

Annotation Number : CG9899
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034829
Gbrowse : chr2R:19046428-19049553 (+) // 100.0 //
Probeset : 1631235_at
Accessions : protein= NP_611764;, nucleotide= NM_137920;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0034829.
VDRC has 2 RNAi stocks for FBgn0034829 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head0 00 of 4 0.10Down
Eye0 00 of 4 0.12Down
Thoracicoabdominal ganglion1 00 of 4 0.20Down
Salivary gland11 30 of 4 1.92None
Crop2 10 of 4 0.40Down
Midgut0 00 of 4 0.20Down
Tubule1 00 of 4 0.30Down
Hindgut1 00 of 4 0.30Down
Heart1 00 of 4 0.32Down
Fat body2 20 of 4 0.47None
Ovary0 00 of 4 0.10Down
Testis86 44 of 415.10Up
Male accessory glands3 10 of 4 0.50None
Virgin spermatheca2 10 of 4 0.39None
Mated spermatheca4 10 of 4 0.71None
Adult carcass1 00 of 4 0.20Down
Larval CNS0 00 of 4 0.13Down
Larval Salivary gland1 00 of 4 0.17Down
Larval midgut0 00 of 4 0.13Down
Larval tubule1 00 of 4 0.20Down
Larval hindgut1 00 of 4 0.33Down
Larval fat body14 61 of 4 2.50None
Larval trachea3 20 of 4 0.59None
Larval carcass1 00 of 4 0.24Down
S2 cells (growing)0 00 of 4 0.10Down
Whole fly5 00 of 4

Looking for FBgn0034829. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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