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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034835 through 18771 annotations produced 1 hits


/// (CG3092 /// DsimCG3092):

Annotation Number : CG3092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034835
Gbrowse : chr2R:19120148-19121451 (+) // 100.0 //
Probeset : 1634778_at
Accessions : protein= NP_611770;, nucleotide= NM_137926;
FlyMine data for FBgn0034835.
BDGP gene expression has embryonic in situ data for CG3092: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034835 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland5 ± 20 of 4 0.05Down
Crop0 ± 00 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body1 ± 00 of 4 0.01Down
Ovary0 ± 00 of 4 0.00Down
Testis1158 ± 434 of 411.10Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca2 ± 00 of 4 0.02Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland3 ± 10 of 4 0.04Down
Larval midgut3 ± 10 of 4 0.03Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.04Down
Larval fat body100 ± 523 of 4 1.00None
Larval trachea8 ± 41 of 4 0.08Down
Larval carcass3 ± 10 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly104 ± 34 of 4

Looking for FBgn0034835. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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