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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034837 through 18771 annotations produced 1 hits



CG9871 (RpL22-like):

Annotation Number : CG9871
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034837
Gbrowse : chr2R:19134114-19135360 (-) // 100.0 //
Probeset : 1630264_at
Accessions : protein= NP_611771;, nucleotide= NM_137927;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0034837.
TRiP has 1 RNAi stocks for FBgn0034837 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head3 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland1 ± 00 of 4 0.03Down
Crop8 ± 00 of 4 0.20Down
Midgut5 ± 10 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut6 ± 10 of 4 0.10Down
Heart1 ± 10 of 4 0.04Down
Fat body9 ± 60 of 4 0.22Down
Ovary6 ± 00 of 4 0.10Down
Testis533 ± 84 of 412.40Up
Male accessory glands5 ± 10 of 4 0.10Down
Virgin spermatheca15 ± 14 of 4 0.35Down
Mated spermatheca14 ± 23 of 4 0.34Down
Adult carcass7 ± 40 of 4 0.20Down
Larval CNS3 ± 11 of 4 0.09Down
Larval Salivary gland6 ± 20 of 4 0.14Down
Larval midgut3 ± 10 of 4 0.08Down
Larval tubule8 ± 11 of 4 0.20Down
Larval hindgut3 ± 00 of 4 0.08Down
Larval fat body148 ± 334 of 4 3.40None
Larval trachea6 ± 41 of 4 0.15Down
Larval carcass6 ± 20 of 4 0.15Down
S2 cells (growing)5 ± 11 of 4 0.13Down
Whole fly43 ± 44 of 4

Looking for FBgn0034837. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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