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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034838 through 18771 annotations produced 1 hits



(CG12782):

Annotation Number : CG12782
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034838
Gbrowse : chr2R:19151791-19153057 (-) // 100.0 //
Probeset : 1636211_at
Accessions : protein= NP_611772;, nucleotide= NM_137928;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034838.
BDGP gene expression has embryonic in situ data for CG12782: 4 pix of staining in 1 body parts.
BioGrid reports that CG12782 interacts with CG8198 CG31359 CG18743 CG31449 CG5834 CG6489 CG31366 .
VDRC has 2 RNAi stocks for FBgn0034838 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head3 ± 10 of 4 0.20Down
Eye0 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.40Down
Salivary gland9 ± 30 of 4 0.69None
Crop5 ± 20 of 4 0.40Down
Midgut4 ± 10 of 4 0.30Down
Tubule2 ± 00 of 4 0.20Down
Hindgut2 ± 00 of 4 0.20Down
Heart0 ± 00 of 4 0.07Down
Fat body2 ± 20 of 4 0.20Down
Ovary1 ± 00 of 4 0.10Down
Testis158 ± 134 of 411.90Up
Male accessory glands9 ± 40 of 4 0.70None
Virgin spermatheca4 ± 10 of 4 0.34Down
Mated spermatheca4 ± 10 of 4 0.36Down
Adult carcass2 ± 00 of 4 0.20Down
Larval CNS1 ± 00 of 4 0.08Down
Larval Salivary gland2 ± 00 of 4 0.21Down
Larval midgut1 ± 00 of 4 0.14Down
Larval tubule5 ± 00 of 4 0.40Down
Larval hindgut1 ± 00 of 4 0.12Down
Larval fat body46 ± 153 of 4 3.50None
Larval trachea3 ± 20 of 4 0.25Down
Larval carcass9 ± 10 of 4 0.70None
S2 cells (growing)4 ± 00 of 4 0.33Down
Whole fly13 ± 23 of 4

Looking for FBgn0034838. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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