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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034839 through 18771 annotations produced 1 hits



(CG13540):

Annotation Number : CG13540
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034839
Gbrowse : chr2R:19158106-19158590 (+) // 100.0 //
Probeset : 1640601_at
Accessions : protein= NP_611773;, nucleotide= NM_137929;
FlyMine data for FBgn0034839.
VDRC has 3 RNAi stocks for FBgn0034839 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 12 of 4 0.20Down
Head9 ± 13 of 4 0.30Down
Eye4 ± 10 of 4 0.13Down
Thoracicoabdominal ganglion8 ± 22 of 4 0.20Down
Salivary gland13 ± 20 of 4 0.35Down
Crop10 ± 31 of 4 0.30Down
Midgut10 ± 20 of 4 0.30Down
Tubule6 ± 10 of 4 0.20Down
Hindgut8 ± 11 of 4 0.20Down
Heart6 ± 22 of 4 0.18Down
Fat body14 ± 24 of 4 0.37Down
Ovary7 ± 02 of 4 0.20Down
Testis510 ± 124 of 413.60Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca11 ± 12 of 4 0.30Down
Mated spermatheca7 ± 10 of 4 0.19Down
Adult carcass9 ± 10 of 4 0.20Down
Larval CNS8 ± 24 of 4 0.21Down
Larval Salivary gland4 ± 10 of 4 0.11Down
Larval midgut9 ± 11 of 4 0.26Down
Larval tubule6 ± 20 of 4 0.20Down
Larval hindgut8 ± 01 of 4 0.22Down
Larval fat body85 ± 334 of 4 2.30None
Larval trachea8 ± 51 of 4 0.23Down
Larval carcass12 ± 23 of 4 0.32Down
S2 cells (growing)7 ± 00 of 4 0.20Down
Whole fly37 ± 04 of 4

Looking for FBgn0034839. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime